PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 159aa    MW: 17926.7 Da    PI: 6.5016
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023591genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.82e-108113198
       DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer........edamsslvyeAearardPvyGavgvilklqqqleq 89 
                  +C+ Ck+ r+ +C+++C+++  fp e   +f+ v  l+G  + + l +++++           ++ ++sl+  +  r ++ v G+ g i+ l+ + ++
  Lus10023591   8 RCQKCKYSRKaECPDGCPFRDFFPPEG-DNFQQVIGLYGKGTSSALSHQMDQLPPtlfpnfhnNAYFNSLTVDGGLRRDNRVVGSSGNIQVLEMERHH 104
                  6*********99************987.89*********988877777763333233355555999**************************999988 PP

       DUF260  90 lkaelallk 98 
                  lk+  ++ +
  Lus10023591 105 LKQGQQYFQ 113
                  887666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.7027116IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-108108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAHQGAQRCQ KCKYSRKAEC PDGCPFRDFF PPEGDNFQQV IGLYGKGTSS ALSHQMDQLP  60
PTLFPNFHNN AYFNSLTVDG GLRRDNRVVG SSGNIQVLEM ERHHLKQGQQ YFQNEANLAH  120
AQNAILSAAN EELVYENNWF RNQHPDENPP PFHDPGNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-10LOB domain-containing protein 24